Index

M

main() (in module padmet_utils.connection.biggAPI_to_padmet) (in module padmet_utils.connection.check_orthology_input) (in module padmet_utils.connection.enhanced_meneco_output) (in module padmet_utils.connection.extract_orthofinder) (in module padmet_utils.connection.extract_rxn_with_gene_assoc) (in module padmet_utils.connection.gbk_to_faa) (in module padmet_utils.connection.gene_to_targets) (in module padmet_utils.connection.modelSeed_to_padmet) (in module padmet_utils.connection.padmet_to_asp) (in module padmet_utils.connection.padmet_to_matrix) (in module padmet_utils.connection.padmet_to_padmet) (in module padmet_utils.connection.padmet_to_tsv) (in module padmet_utils.connection.pgdb_to_padmet) (in module padmet_utils.connection.sbmlGenerator) (in module padmet_utils.connection.sbml_to_curation_form) (in module padmet_utils.connection.sbml_to_padmet) (in module padmet_utils.connection.wikiGenerator) (in module padmet_utils.exploration.compare_padmet) (in module padmet_utils.exploration.compare_sbml_padmet) (in module padmet_utils.exploration.convert_sbml_db) (in module padmet_utils.exploration.get_pwy_from_rxn), [1] (in module padmet_utils.exploration.report_network) (in module padmet_utils.exploration.visu_path) (in module padmet_utils.management.manual_curation) (in module padmet_utils.management.padmet_compart) (in module padmet_utils.management.padmet_medium)

P

padmet_utils.connection.biggAPI_to_padmet (module) padmet_utils.connection.check_orthology_input (module) padmet_utils.connection.enhanced_meneco_output (module) padmet_utils.connection.extract_orthofinder (module) padmet_utils.connection.extract_rxn_with_gene_assoc (module) padmet_utils.connection.gbk_to_faa (module) padmet_utils.connection.gene_to_targets (module) padmet_utils.connection.modelSeed_to_padmet (module) padmet_utils.connection.padmet_to_asp (module) padmet_utils.connection.padmet_to_matrix (module) padmet_utils.connection.padmet_to_padmet (module) padmet_utils.connection.padmet_to_tsv (module) padmet_utils.connection.pgdb_to_padmet (module)

padmet_utils.connection.sbml_to_curation_form (module) padmet_utils.connection.sbml_to_padmet (module) padmet_utils.connection.sbmlGenerator (module) padmet_utils.connection.wikiGenerator (module) padmet_utils.exploration.compare_padmet (module) padmet_utils.exploration.compare_sbml_padmet (module) padmet_utils.exploration.convert_sbml_db (module) padmet_utils.exploration.get_pwy_from_rxn (module), [1] padmet_utils.exploration.report_network (module) padmet_utils.exploration.visu_path (module) padmet_utils.management.manual_curation (module) padmet_utils.management.padmet_compart (module) padmet_utils.management.padmet_medium (module)

S

save_plot() (in module padmet_utils.exploration.visu_path)